Webspec for Chandra Cycle 10

Updated Webspec with the Chandra cycle 10 responses.

Suzaku XIS response generator

Checked in xsl_suzaku_xis_makeresp, an automated script to build the XIS rmf and arf by calling xisrmfgen and xissimarfgen. Three speed options (fast, medium, slow) use different channel and energy binning schemes as well as different accuracies in the xissimarfgen run. The accuracies probably need a little more tweaking.

The point source option assumes that the source is in the center of the WMAP. Other possibilities here are to use ftstat on the WMAP to get the pixel with the highest value or the centroid of the map. It's not clear which is the best thing to do.

I would like to be able to use the algorithm found by Randall and implemented in xissmooth. This requires turning xissmooth into a general purpose ftool.

first xspec v12.4 patches

A couple of minor patches are now up

12.4.0a

This fixes some cases where invalid input leads to segmentation faults: The model command crashes for certain forms of invalid model syntax. The tclout command crashes for some of its options when the invalid spectrum number 0 is specified while there are data sets loaded. Our thanks to Jeremy Sanders for pointing this out. Report added on Dec 10, 2007. This patch modifies headas/Xspec/src/XSUser/Handler/HandlerUtils.cxx, XSUtil/Parse/Expression.cxx, and XSPlot/Plot/Plot.cxx

12.4.0b

For the model command, entering the abbreviated name bkn should select the bknpower component and not the bkn2pow component. Our thanks to Davide Donato for pointing this out. Report added on Dec 18, 2007. This patch modifies headas/Xspec/src/manager/model.dat

MJDREF precision and time filter file in extractor

Craig Markwardt spotted that when extractor writes out MJDREF it is only in single precision while it can be read in at double precision. Modified this to preserve precision as v4.80.

Craig also noted that the time filter file can be specified as just the filename or the filename with a numerical HDU specifier but not with a named HDU eg filename[STDGTI]). This is now fixed in v4.81.

XSPEC wiki and some notes for Suzaku

I've added notes for the Suzaku meeting in San Diego to the new XSPEC wiki.

xspec v12.4 released

v12.4 is now available as part of HEAsoft 6.4.

running xspec as a shell

John Baker just came up with a way of running xspec which hadn't occurred to me. Create a file of xspec commands with the first line as

#!/path-to-executable/xspec

This has the advantage that arguments can be used eg

cat > testscript.xcm
#!/path-to-executable/xspec
data $argv
^D

chmod +x testscript.xcm

testscript.xcm file.pha

model.dat entry for refsch in xspec v12

The refsch model.dat entry has a unit on one parameter of "erg cm/s". This is not interpreted correctly by xspec v12 with the result that the default input parameter values end up strange. The fix is to change the unit definition to ergcm/s.

bad error in gabs model

Takao Kitaguchi and colleagues at the University of Tokyo point out that the gabs, gaussian absorption, model gives a result dependent on the energy bin size. This has been fixed in v11.3.2aj and v12.4.0.

rescalecov.tcl

Wrote a handy XSPEC Tcl procedure to multiply the covariance matrix used in an MCMC chain proposal distribution by a factor. Use after defining a proposal distribution by eg

 XSPEC12>chain proposal cauchy fit
XSPEC12>source rescalecov.tcl
XSPEC12>rescalecov 0.5

which divides all elements in the covariance matrix by 2.

rgsrmfsmooth

Created a new ftool to correct the XMM RGS response for an extended source. This uses Andy Rasmussen's code included in the xspec v11 model rgsxsrc. Since that model has no free parameters it seems easier just to modify the response matrix before reading it into xspec and that is what this new tool does. This replaces the need to add rgsxsrc to xspec v12.

Preprints

Flegal et al. discuss error estimation methods for MCMC computations.

Clifford Will notes that if there are stars in highly eccentric short period orbits (<~0.1 year) around Sgr A* they could be used to test the no-hair theorem. Cen & Fang show that GRBs may be biased tracers of star formation.

Eckert et al. use Integral IBIS imaging of the Coma cluster to find a hard X-ray source extending in the direction of the sub-cluster and co-incident with 1.4 GHz emission.

Ajith et al. construct a template bank for the GW signal from coalescing non-spinning BHs.

Ishak et al. show that gravitational lensing has a dependence on the cosmological constant and that current observations place an upper limit which is competitive with values determined from cosmology.

Davison & Sartori present their approach to the "Banff Challenge" of finding a signal in noisy particle physics data.

Dimopoulos et al. propose GW detection using atom interferometry which has the potential to be more sensitive than LIGO from the ground and LISA from space.

xspec plot contour

The contour information being passed from xspec to PLT was not at a high enough precision leading to problems when there are many (>10000) data channels and hence a large value of chi-squared. Fixed this for the 12.4 release.

fluxerror and linked parameters

Robert Dunn pointed out that fluxerror.tcl doesn't work correctly if there are linked parameters. I made a simple fix to correct that. It does require the xspec 12.3.1an patch.

Preprints

Jasra et al. present a population-based Reversible Jump MCMC method and argue that it works better than other MCMC methods on high dimension problems.

Hardcastle et al. report on an accumulated 700ksec observation of the Cen A jet which shows that the outer part of the jet requires an as yet unknown distributed acceleration mechanism.

Gierlinski et al. argue that the high frequency end of the power density spectrum in the hard states of BH sources is invariant in shape and the amplitude provides an estimate of the mass.

Snowden et al. present a catolog of 70 XMM cluster observations with a detailed description of their handling of background.

Lang & Hughes investigate the ability of GW observations to localize a SMBH-SMBH merger.

Narayan et al. fit Novikov-Thorne thin disk models to X-ray transients in the thermal state and estimate black hole rotation rates.

Mahdavi et al. compare weak lensing and X-ray measures of mass and find evidence for non-thermal pressure support.

Bianchi et al. use XMM and optical observations of NGC3147 to show that it has no intrinsic X-ray absorption but also no optical broad lines.

XSPEC bug fixes for tclout plink and fakeit

A couple of recent minor bug fixes...

12.3.1an	For the tclout plink option, it is more useful to output the link string in a format which can be used as input for other parameter commands, such as newpar. Our thanks to Jeremy Sanders for pointing this out. Report added on Oct 15, 2007. The fix is to replace headas/Xspec/src/XSUser/Handler/xsTclout.cxx, and rebuild xspec.
12.3.1ao	When a fakeit run is using a response with first legal channel number (TLMIN4) = 0, and is NOT based on an already existing spectrum, the last channel is erroneously ignored and always ends up with 0 counts. Our thanks to David Morris for pointing this out. Report added on Oct 31, 2007. The fix is to replace headas/Xspec/src/XSModel/Data/SpectralData.cxx, and rebuild xspec.

rbnrmf bug in energy binning

I made an error in the new energy binning option - I should be averaging the response rather than summing it so the resulting responses were too large by the binning factor. Also, there was a one-off problem for responses with zero-based channels. Checked in fixes.

Preprints

Franz discusses confidence regions on ratios.

Hague et al. discuss statistical tests for deviations from the power-law for the cosmic ray energy spectrum.

Lang & Hughes investigate the ability to localize SMBH mergers from the GW signal.

Comastri & Brusa review AGN results from X-ray surveys and their multiwavelength follow-up and consider that case for 2-3 Msec XMM survey.

Rapetti & Allen consider what it would take to use X-ray observations of cluster of galaxies to determine dark energy parameters with a precision comparable to other methods.

Brunetti et al estimate hard X-ray fluxes from clusters of galaxies and relate them to prospective observations with SIMBOL-X.

webspec

Spent some time working on webspec. Main changes are to the look : the front page is more compact so I don't have to scroll down to hit the button; the advanced page allows up to 9 components; the basic and advanced pages both read the list of missions from the same file so they won't fall out of step as in the past; the page to set exposure and parameters has been tidied up a bit; the results page now has the plot next to the set of options to change plotting parameters.

I would like to have the replot option simply change the plot on the current results page rather than opening a new page however this would involve substantial programming changes. Another nice option would be the ability to make contour plots (by running steppar) however this is a potentially huge cpu hog and I'm not sure we want to do this on the main web servers. Perhaps this would be better as part of heraspec.

UPDATE: Fixed a problem that appeared under Safari - the check box for background was not coming up checked by default because I put checked inside double quotes in the html input tag.

OpenMP

gcc 4.2 and later now includes support for the OpenMP shared-memory parallelization API. This would be a good way of adding support to xspec for multi-core machines. This can be used in C/C++ or Fortran and provides a simple way of parallelizing loops.